Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA1400 | PA5435 | PA1400 | PA5435 | Probable pyruvate carboxylase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable transcarboxylase subunit; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.978 |
| PA1400 | atuA | PA1400 | PA2886 | Probable pyruvate carboxylase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Expressed protein with apparent function in citronellol catabolism; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.655 |
| PA1400 | atuC | PA1400 | PA2888 | Probable pyruvate carboxylase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | geranyl-CoA carboxylase, beta-subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.638 |
| PA1400 | atuF | PA1400 | PA2891 | Probable pyruvate carboxylase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | geranyl-CoA carboxylase, alpha-subunit (biotin-containing); Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.993 |
| PA1400 | liuB | PA1400 | PA2014 | Probable pyruvate carboxylase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | methylcrotonyl-CoA carboxylase, beta-subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.636 |
| PA5435 | PA1400 | PA5435 | PA1400 | Probable transcarboxylase subunit; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable pyruvate carboxylase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.978 |
| PA5435 | atuC | PA5435 | PA2888 | Probable transcarboxylase subunit; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | geranyl-CoA carboxylase, beta-subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.521 |
| PA5435 | atuF | PA5435 | PA2891 | Probable transcarboxylase subunit; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | geranyl-CoA carboxylase, alpha-subunit (biotin-containing); Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.993 |
| PA5435 | liuB | PA5435 | PA2014 | Probable transcarboxylase subunit; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | methylcrotonyl-CoA carboxylase, beta-subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.521 |
| atuA | PA1400 | PA2886 | PA1400 | Expressed protein with apparent function in citronellol catabolism; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Probable pyruvate carboxylase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.655 |
| atuA | atuB | PA2886 | PA2887 | Expressed protein with apparent function in citronellol catabolism; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Putative dehydrogenase involved in catabolism of citronellol; Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene. | 0.996 |
| atuA | atuC | PA2886 | PA2888 | Expressed protein with apparent function in citronellol catabolism; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | geranyl-CoA carboxylase, beta-subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.996 |
| atuA | atuD | PA2886 | PA2889 | Expressed protein with apparent function in citronellol catabolism; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Putative citronellyl-CoA dehydrogenase involved in catabolism of citronellol; Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene. | 0.993 |
| atuA | atuE | PA2886 | PA2890 | Expressed protein with apparent function in citronellol catabolism; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Putative isohexenylglutaconyl-CoA hydratase; Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene. | 0.991 |
| atuA | atuF | PA2886 | PA2891 | Expressed protein with apparent function in citronellol catabolism; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | geranyl-CoA carboxylase, alpha-subunit (biotin-containing); Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.980 |
| atuA | atuG | PA2886 | PA2892 | Expressed protein with apparent function in citronellol catabolism; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Putative short chain dehydrogenase involved in catabolism of citronellol; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.988 |
| atuA | atuH | PA2886 | PA2893 | Expressed protein with apparent function in citronellol catabolism; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Putative very-long chain acyl-CoA synthetase; Class 4: Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences. | 0.958 |
| atuA | liuB | PA2886 | PA2014 | Expressed protein with apparent function in citronellol catabolism; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | methylcrotonyl-CoA carboxylase, beta-subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.830 |
| atuB | atuA | PA2887 | PA2886 | Putative dehydrogenase involved in catabolism of citronellol; Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene. | Expressed protein with apparent function in citronellol catabolism; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.996 |
| atuB | atuC | PA2887 | PA2888 | Putative dehydrogenase involved in catabolism of citronellol; Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene. | geranyl-CoA carboxylase, beta-subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.997 |
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